PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090516.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family YABBY
Protein Properties Length: 190aa    MW: 21100.8 Da    PI: 8.5063
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090516.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY221.52.5e-6861595170
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                      +se+vCyv+CnfCntilavsvP +slf++vtvrCGhC +llsvn++ as ++   ++         +++  ++e+ +k++ ++++++++ +   
  XP_010090516.1   6 MASERVCYVHCNFCNTILAVSVPCSSLFTIVTVRCGHCGNLLSVNMEAASLQTVPPQD--------PQKQISSSENPVKEYGSSSKCNKHAN--- 89 
                     689******************************************9988755444433........34445555556665555554443333... PP

           YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      l e+ d+e p     irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_010090516.1  90 -LLESVDHEQPARSSPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 159
                     .3334444444444459****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.9E-737159IPR006780YABBY protein
SuperFamilySSF470951.1E-8101152IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.2E-5106153IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSLDMMASER VCYVHCNFCN TILAVSVPCS SLFTIVTVRC GHCGNLLSVN MEAASLQTVP  60
PQDPQKQISS SENPVKEYGS SSKCNKHANL LESVDHEQPA RSSPIRPPEK RQRVPSAYNR  120
FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDGTKNKQAK LDQTIPGDHQ  180
GTHQAANGFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090516.11e-142hypothetical protein L484_017140
SwissprotQ9XFB02e-77YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLW9QKW01e-142W9QKW0_9R
STRINGVIT_06s0009g00880.t011e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-78YABBY family protein